STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (549 aa)    
Predicted Functional Partners:
MPLA_180063
Putative cytoplasmic protein.
  
    0.780
MPLA_250044
Uncharacterized protein.
  
     0.691
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
    0.612
MPLA_580020
UPF0335 protein MPLA_580020; Belongs to the UPF0335 family.
  
     0.612
cobT-3
Aerobic cobaltochelatase subunit CobT.
  
     0.594
gltX-2
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.581
rpmI
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.573
MPLA_1190076
OmpR/PhoB-type domain-containing protein.
  
     0.554
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.553
MPLA_1070020
DUF2156 domain-containing protein.
    
  0.547
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.