Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tldDPutative peptidase TldD. (470 aa)    
Predicted Functional Partners:
MPLA_720045
PmbA protein, maturation of antibiotic MccB17.
 
 
0.909
MPLA_1800047
Transcriptional regulator, AbrB family.
       0.576
MPLA_760008
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.568
MPLA_1800050
Invasion associated locus B family protein.
       0.541
MPLA_1800049
Uncharacterized protein.
       0.531
MPLA_1800046
PilT protein domain protein.
       0.449
MPLA_580050
Thiamine-phosphate pyrophosphorylase.
  
  
 0.427
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
   
 0.410
MPLA_2130136
Uncharacterized protein.
   
    0.406
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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