oppA protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

oppA

Oligopeptide transporter subunit periplasmic-binding component of ABC superfamily. (530 aa)

Predicted Functional Partners:

oppB

0.991

MPLA_1800146

0.984

yliC

0.939

yliC-4

0.934

yejF-2

0.932

dppB-2

0.929

dppF

0.918

yliB

0.915

yliC-2

0.915

MPLA_660020

0.913

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1800146	MPLA_660020	MPLA_1800146	MPLA_660020	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein family 5.	0.682
MPLA_1800146	dppB-2	MPLA_1800146	MPLA_800017	Binding-protein-dependent transport systems inner membrane component.	Dipeptide transporter membrane component of ABC superfamily.	0.963
MPLA_1800146	dppF	MPLA_1800146	MPLA_760021	Binding-protein-dependent transport systems inner membrane component.	Dipeptide transporter ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.	0.944
MPLA_1800146	oppA	MPLA_1800146	MPLA_1800144	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide transporter subunit periplasmic-binding component of ABC superfamily.	0.984
MPLA_1800146	oppB	MPLA_1800146	MPLA_1800145	Binding-protein-dependent transport systems inner membrane component.	Oligopeptide transporter subunit membrane component of ABC superfamily.	0.996
MPLA_1800146	yejF-2	MPLA_1800146	MPLA_1800147	Binding-protein-dependent transport systems inner membrane component.	Putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components; Belongs to the ABC transporter superfamily.	0.984
MPLA_1800146	yliB	MPLA_1800146	MPLA_180015	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily.	0.752
MPLA_1800146	yliC	MPLA_1800146	MPLA_180016	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.969
MPLA_1800146	yliC-2	MPLA_1800146	MPLA_320135	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.965
MPLA_1800146	yliC-4	MPLA_1800146	MPLA_760024	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.969
MPLA_660020	MPLA_1800146	MPLA_660020	MPLA_1800146	Extracellular solute-binding protein family 5.	Binding-protein-dependent transport systems inner membrane component.	0.682
MPLA_660020	dppB-2	MPLA_660020	MPLA_800017	Extracellular solute-binding protein family 5.	Dipeptide transporter membrane component of ABC superfamily.	0.795
MPLA_660020	dppF	MPLA_660020	MPLA_760021	Extracellular solute-binding protein family 5.	Dipeptide transporter ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.	0.768
MPLA_660020	oppA	MPLA_660020	MPLA_1800144	Extracellular solute-binding protein family 5.	Oligopeptide transporter subunit periplasmic-binding component of ABC superfamily.	0.913
MPLA_660020	oppB	MPLA_660020	MPLA_1800145	Extracellular solute-binding protein family 5.	Oligopeptide transporter subunit membrane component of ABC superfamily.	0.709
MPLA_660020	yliB	MPLA_660020	MPLA_180015	Extracellular solute-binding protein family 5.	Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily.	0.866
MPLA_660020	yliC	MPLA_660020	MPLA_180016	Extracellular solute-binding protein family 5.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.760
MPLA_660020	yliC-2	MPLA_660020	MPLA_320135	Extracellular solute-binding protein family 5.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.717
MPLA_660020	yliC-4	MPLA_660020	MPLA_760024	Extracellular solute-binding protein family 5.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.731
dppB-2	MPLA_1800146	MPLA_800017	MPLA_1800146	Dipeptide transporter membrane component of ABC superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.963