yliC protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yliC

Putative peptide transporter permease subunit: membrane component of ABC superfamily. (306 aa)

Predicted Functional Partners:

dppC

0.982

yliB

0.974

yliD

0.970

MPLA_1800146

0.969

MPLA_800014

0.960

yliD-2

0.958

dppC-4

0.957

dppC-3

0.952

yliA-2

0.949

dppC-2

0.946

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1800146	MPLA_800014	MPLA_1800146	MPLA_800014	Binding-protein-dependent transport systems inner membrane component.	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	0.929
MPLA_1800146	dppC-2	MPLA_1800146	MPLA_660022	Binding-protein-dependent transport systems inner membrane component.	Dipeptide transporter membrane component of ABC superfamily.	0.405
MPLA_1800146	yliA-2	MPLA_1800146	MPLA_180013	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transport fused subunits of ABC superfamily: ATP-binding components; Belongs to the ABC transporter superfamily.	0.788
MPLA_1800146	yliB	MPLA_1800146	MPLA_180015	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily.	0.752
MPLA_1800146	yliC	MPLA_1800146	MPLA_180016	Binding-protein-dependent transport systems inner membrane component.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.969
MPLA_800014	MPLA_1800146	MPLA_800014	MPLA_1800146	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.929
MPLA_800014	dppC	MPLA_800014	MPLA_180017	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Dipeptide transporter membrane component of ABC superfamily.	0.941
MPLA_800014	dppC-2	MPLA_800014	MPLA_660022	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Dipeptide transporter membrane component of ABC superfamily.	0.944
MPLA_800014	dppC-3	MPLA_800014	MPLA_790002	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Dipeptide transporter membrane component of ABC superfamily.	0.975
MPLA_800014	dppC-4	MPLA_800014	MPLA_800016	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Dipeptide transporter membrane component of ABC superfamily.	0.997
MPLA_800014	yliB	MPLA_800014	MPLA_180015	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily.	0.813
MPLA_800014	yliC	MPLA_800014	MPLA_180016	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.960
MPLA_800014	yliD	MPLA_800014	MPLA_320136	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.937
MPLA_800014	yliD-2	MPLA_800014	MPLA_760023	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.961
dppC	MPLA_800014	MPLA_180017	MPLA_800014	Dipeptide transporter membrane component of ABC superfamily.	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	0.941
dppC	yliA-2	MPLA_180017	MPLA_180013	Dipeptide transporter membrane component of ABC superfamily.	Putative peptide transport fused subunits of ABC superfamily: ATP-binding components; Belongs to the ABC transporter superfamily.	0.917
dppC	yliB	MPLA_180017	MPLA_180015	Dipeptide transporter membrane component of ABC superfamily.	Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily.	0.963
dppC	yliC	MPLA_180017	MPLA_180016	Dipeptide transporter membrane component of ABC superfamily.	Putative peptide transporter permease subunit: membrane component of ABC superfamily.	0.982
dppC-2	MPLA_1800146	MPLA_660022	MPLA_1800146	Dipeptide transporter membrane component of ABC superfamily.	Binding-protein-dependent transport systems inner membrane component.	0.405
dppC-2	MPLA_800014	MPLA_660022	MPLA_800014	Dipeptide transporter membrane component of ABC superfamily.	ABC transporter ATP-binding component; Belongs to the ABC transporter superfamily.	0.944