MPLA_180038 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_180038

Extracellular solute-binding protein family 3. (290 aa)

Predicted Functional Partners:

MPLA_180039

0.935

MPLA_180040

0.924

glnQ-2

0.902

hisQ

0.791

hisM

0.771

MPLA_1150002

0.762

MPLA_800007

0.761

glnQ-3

0.755

gltK

0.751

MPLA_1150001

0.750

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1150001	MPLA_1150002	MPLA_1150001	MPLA_1150002	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150001	MPLA_180038	MPLA_1150001	MPLA_180038	Polar amino acid ABC transporter inner membrane subunit.	Extracellular solute-binding protein family 3.	0.750
MPLA_1150001	MPLA_180039	MPLA_1150001	MPLA_180039	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.910
MPLA_1150001	MPLA_180040	MPLA_1150001	MPLA_180040	Polar amino acid ABC transporter inner membrane subunit.	Glutamine ABC transporter (Integral membrane protein).	0.911
MPLA_1150001	MPLA_800007	MPLA_1150001	MPLA_800007	Polar amino acid ABC transporter inner membrane subunit.	ABC transporter permease protein.	0.918
MPLA_1150001	glnQ-2	MPLA_1150001	MPLA_180041	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transporter subunit ATP-binding component of ABC superfamily.	0.930
MPLA_1150001	glnQ-3	MPLA_1150001	MPLA_690019	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transport ATP-binding protein GlnQ.	0.822
MPLA_1150001	gltK	MPLA_1150001	MPLA_680062	Polar amino acid ABC transporter inner membrane subunit.	Glutamate and aspartate transporter subunit membrane component of ABC superfamily.	0.768
MPLA_1150001	hisM	MPLA_1150001	MPLA_1170005	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.763
MPLA_1150001	hisQ	MPLA_1150001	MPLA_1170006	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.794
MPLA_1150002	MPLA_1150001	MPLA_1150002	MPLA_1150001	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150002	MPLA_180038	MPLA_1150002	MPLA_180038	Polar amino acid ABC transporter inner membrane subunit.	Extracellular solute-binding protein family 3.	0.762
MPLA_1150002	MPLA_180039	MPLA_1150002	MPLA_180039	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.918
MPLA_1150002	MPLA_180040	MPLA_1150002	MPLA_180040	Polar amino acid ABC transporter inner membrane subunit.	Glutamine ABC transporter (Integral membrane protein).	0.909
MPLA_1150002	MPLA_800007	MPLA_1150002	MPLA_800007	Polar amino acid ABC transporter inner membrane subunit.	ABC transporter permease protein.	0.913
MPLA_1150002	glnQ-2	MPLA_1150002	MPLA_180041	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transporter subunit ATP-binding component of ABC superfamily.	0.926
MPLA_1150002	glnQ-3	MPLA_1150002	MPLA_690019	Polar amino acid ABC transporter inner membrane subunit.	Glutamine transport ATP-binding protein GlnQ.	0.818
MPLA_1150002	gltK	MPLA_1150002	MPLA_680062	Polar amino acid ABC transporter inner membrane subunit.	Glutamate and aspartate transporter subunit membrane component of ABC superfamily.	0.776
MPLA_1150002	hisM	MPLA_1150002	MPLA_1170005	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.770
MPLA_1150002	hisQ	MPLA_1150002	MPLA_1170006	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.833