Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_180114HWE histidine kinase. (343 aa)    
Predicted Functional Partners:
phyR
Regulatory protein PhyR.
 
  
 0.877
MPLA_2000003
Uncharacterized protein.
  
     0.772
MPLA_910001
Blue-light-activated histidine kinase.
  
     0.772
MPLA_180120
Response regulator receiver protein.
 
  
  0.768
MPLA_740022
ATP-binding region ATPase domain protein.
 
  
 0.756
MPLA_830084
Response regulator receiver protein.
  
     0.721
MPLA_1530039
Response regulator receiver.
  
   
 0.715
MPLA_1800149
PAS sensor protein.
    
 0.700
MPLA_720057
Histidine kinase.
    
 0.691
MPLA_180118
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.690
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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