Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ntrBNitrogen regulation protein ntrB. (378 aa)    
Predicted Functional Partners:
ntrC
DNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.998
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.965
ntrX
Nitrogen assimilation regulatory protein.
 
 0.956
MPLA_500003
Belongs to the P(II) protein family.
  
 0.926
dusB
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.905
MPLA_140335
Sigma-54 factor interaction domain-containing protein.
 
 0.899
yfhA
Putative DNA-binding response regulator in two-component system.
 
 0.895
MPLA_720056
Putative sensor/response regulator hybrid protein.
   
 0.894
dctD
C4-dicarboxylate transport transcriptional regulatory protein DctD.
 
 0.890
amtB
Ammonium transporter.
  
 
 0.870
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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