STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lcdH-3L-carnitine dehydrogenase. (311 aa)    
Predicted Functional Partners:
phbA
Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase); Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.944
yqeF
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.943
paaE
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.938
MPLA_1390105
Putative acetyl-CoA C-acetyltransferase.
  
 0.936
MPLA_1800165
Putative 3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.936
MPLA_1680005
Putative acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.935
MPLA_1930008
Uncharacterized protein.
 
  
 0.842
MPLA_1930006
Short-chain dehydrogenase/reductase SDR.
  
  0.826
MPLA_1930001
Enoyl-CoA hydratase/isomerase.
 
  0.823
MPLA_1100036
Acyl-CoA dehydrogenase.
  
  0.800
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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