Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_1930008Uncharacterized protein. (309 aa)    
Predicted Functional Partners:
lcdH-3
L-carnitine dehydrogenase.
 
  
 0.842
ydcW
Medium chain aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.773
MPLA_1930006
Short-chain dehydrogenase/reductase SDR.
  
    0.714
thcD-2
Rhodocoxin reductase.
       0.699
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.648
MPLA_780001
Uncharacterized protein.
  
    0.632
MPLA_660030
Transcriptional regulator, XRE family.
  
    0.618
MPLA_1930003
Putative AraC family transcriptional regulator.
       0.594
catI
3-oxoadipate CoA-transferase subunit A.
    
 0.531
catJ
3-oxoadipate CoA-transferase subunit B.
    
 0.516
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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