MPLA_20006 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_20006

ABC transporter domain-containing protein. (273 aa)

Predicted Functional Partners:

MPLA_20007

0.991

MPLA_20005

0.982

MPLA_1280054

0.919

MPLA_390003

0.904

MPLA_720017

0.900

MPLA_90018

0.899

MPLA_320186

0.892

tauC

0.891

MPLA_20003

0.881

MPLA_120029

0.873

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_120029	MPLA_20006	MPLA_120029	MPLA_20006	Binding-protein-dependent transport systems inner membrane component.	ABC transporter domain-containing protein.	0.873
MPLA_120029	MPLA_20007	MPLA_120029	MPLA_20007	Binding-protein-dependent transport systems inner membrane component.	Permease protein of ABC transporter.	0.743
MPLA_120029	MPLA_320186	MPLA_120029	MPLA_320186	Binding-protein-dependent transport systems inner membrane component.	Putative ABC transporter (Permease protein).	0.742
MPLA_120029	MPLA_90018	MPLA_120029	MPLA_90018	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.767
MPLA_1280054	MPLA_20005	MPLA_1280054	MPLA_20005	Binding-protein-dependent transport systems inner membrane component.	ATP-binding protein of ABC transporter.	0.453
MPLA_1280054	MPLA_20006	MPLA_1280054	MPLA_20006	Binding-protein-dependent transport systems inner membrane component.	ABC transporter domain-containing protein.	0.919
MPLA_1280054	MPLA_20007	MPLA_1280054	MPLA_20007	Binding-protein-dependent transport systems inner membrane component.	Permease protein of ABC transporter.	0.763
MPLA_1280054	MPLA_390003	MPLA_1280054	MPLA_390003	Binding-protein-dependent transport systems inner membrane component.	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	0.790
MPLA_20003	MPLA_20005	MPLA_20003	MPLA_20005	FAD-binding PCMH-type domain-containing protein.	ATP-binding protein of ABC transporter.	0.912
MPLA_20003	MPLA_20006	MPLA_20003	MPLA_20006	FAD-binding PCMH-type domain-containing protein.	ABC transporter domain-containing protein.	0.881
MPLA_20003	MPLA_20007	MPLA_20003	MPLA_20007	FAD-binding PCMH-type domain-containing protein.	Permease protein of ABC transporter.	0.918
MPLA_20005	MPLA_1280054	MPLA_20005	MPLA_1280054	ATP-binding protein of ABC transporter.	Binding-protein-dependent transport systems inner membrane component.	0.453
MPLA_20005	MPLA_20003	MPLA_20005	MPLA_20003	ATP-binding protein of ABC transporter.	FAD-binding PCMH-type domain-containing protein.	0.912
MPLA_20005	MPLA_20006	MPLA_20005	MPLA_20006	ATP-binding protein of ABC transporter.	ABC transporter domain-containing protein.	0.982
MPLA_20005	MPLA_20007	MPLA_20005	MPLA_20007	ATP-binding protein of ABC transporter.	Permease protein of ABC transporter.	0.987
MPLA_20005	MPLA_320186	MPLA_20005	MPLA_320186	ATP-binding protein of ABC transporter.	Putative ABC transporter (Permease protein).	0.650
MPLA_20005	MPLA_390003	MPLA_20005	MPLA_390003	ATP-binding protein of ABC transporter.	Putative ABC transporter, permease protein aliphatic sulfonates transporter.	0.463
MPLA_20005	MPLA_720017	MPLA_20005	MPLA_720017	ATP-binding protein of ABC transporter.	Binding-protein-dependent transport systems inner membrane component.	0.688
MPLA_20005	MPLA_90018	MPLA_20005	MPLA_90018	ATP-binding protein of ABC transporter.	Binding-protein-dependent transport systems inner membrane component.	0.452
MPLA_20005	tauC	MPLA_20005	MPLA_380052	ATP-binding protein of ABC transporter.	Taurine transporter subunit membrane component of ABC superfamily.	0.441