Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_2130073Lytic transglycosylase. (258 aa)    
Predicted Functional Partners:
MPLA_2130074
Uncharacterized protein.
 
     0.908
MPLA_2130076
Uncharacterized protein.
 
     0.889
MPLA_2130075
Conjugal transfer protein TraF.
 
     0.828
MPLA_2130078
HTH_17 domain-containing protein.
 
     0.825
MPLA_2130077
Replication initiator protein A.
 
     0.799
MPLA_2130072
Uncharacterized protein.
 
     0.777
MPLA_2130079
Uncharacterized protein.
 
     0.606
MPLA_2130096
Uncharacterized protein.
  
     0.583
MPLA_2140005
Uncharacterized protein.
  
     0.582
MPLA_2130097
Toprim domain-containing protein.
  
     0.578
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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