Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbGPutative TRBG CONJUGAL TRANSFER PROTEIN. (342 aa)    
Predicted Functional Partners:
trbI
Putative TRBI CONJUGAL TRANSFER TRANSMEMBRANE PROTEIN.
 
 0.999
MPLA_2130022
Putative conjugal transfer protein trbI.
 
 0.994
trbE-2
Conjugal transfer protein TrbE.
 
 
 0.994
MPLA_2130109
Conjugal transfer protein TrbL.
 
  
 0.985
MPLA_2130108
Conjugal transfer protein.
 
  
 0.983
MPLA_2130110
Conjugal transfer protein TrbJ.
 
  
 0.980
MPLA_2130113
Conjugal transfer protein TrbC.
 
  
 0.980
trbD
Putative TRBD CONJUGAL TRANSFER PROTEIN.
 
  
 0.978
trbE
Conjugal transfer protein trbE.
 
 
 0.977
trbB-2
Conjugal transfer protein TrbB.
 
  
 0.966
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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