Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_2130154Uncharacterized protein. (655 aa)    
Predicted Functional Partners:
MPLA_2130156
Plasmid transfer protein TraF.
 
     0.880
MPLA_2130157
HTH_17 domain-containing protein.
 
     0.879
MPLA_2130158
Uncharacterized protein.
 
     0.827
traG
Conjugal transfer protein TraG.
 
   
 0.811
MPLA_2130049
Putative plasmid transfer factor, traG protein.
 
   
 0.808
MPLA_2130115
Uncharacterized protein.
 
     0.790
MPLA_2130075
Conjugal transfer protein TraF.
 
     0.788
MPLA_2130110
Conjugal transfer protein TrbJ.
 
     0.788
trbG
Putative TRBG CONJUGAL TRANSFER PROTEIN.
 
     0.787
MPLA_2130108
Conjugal transfer protein.
 
     0.787
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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