Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
fixGNitrogen fixation protein FixG. (519 aa)    
Predicted Functional Partners:
fixH
Nitrogen fixation protein FixH.
 
  
 0.977
fixP
Cbb3-type cytochrome c oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.975
MPLA_2140034
Cytochrome c oxidase, cbb3-type, subunit II.
 
  
 0.972
MPLA_140099
Cytochrome c class I.
 
  
 0.963
MPLA_830029
Cytochrome c oxidase, cbb3-type, subunit II.
 
  
 0.962
MPLA_2140035
Cytochrome c oxidase polypeptide I fixN homolog; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.957
fixP-2
Cbb3-type cytochrome c oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.957
MPLA_830028
Nitrogen fixation protein FixQ.
 
  
 0.951
fixN
Cytochrome c oxidase subunit 1 homolog, bacteroid; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.941
fixI
Nitrogen fixation protein FixI.
 
  
 0.926
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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