MPLA_220022 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_220022

ABC transporter domain-containing protein. (608 aa)

Predicted Functional Partners:

MPLA_1350069

0.856

ABCB

0.684

recA

0.609

MPLA_220023

0.594

MPLA_220021

0.573

MPLA_140116

0.533

MPLA_160024

0.521

MPLA_160066

0.514

MPLA_1350001

0.508

MPLA_140126

0.508

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB	MPLA_1350001	MPLA_1230031	MPLA_1350001	ABC transporter B family member 25, mitochondrial.	ABC transporter related protein.	0.768
ABCB	MPLA_1350069	MPLA_1230031	MPLA_1350069	ABC transporter B family member 25, mitochondrial.	Sigma 54 interacting domain protein.	0.684
ABCB	MPLA_140126	MPLA_1230031	MPLA_140126	ABC transporter B family member 25, mitochondrial.	Uncharacterized protein.	0.717
ABCB	MPLA_160066	MPLA_1230031	MPLA_160066	ABC transporter B family member 25, mitochondrial.	Uncharacterized protein.	0.504
ABCB	MPLA_220022	MPLA_1230031	MPLA_220022	ABC transporter B family member 25, mitochondrial.	ABC transporter domain-containing protein.	0.684
MPLA_1350001	ABCB	MPLA_1350001	MPLA_1230031	ABC transporter related protein.	ABC transporter B family member 25, mitochondrial.	0.768
MPLA_1350001	MPLA_1350069	MPLA_1350001	MPLA_1350069	ABC transporter related protein.	Sigma 54 interacting domain protein.	0.508
MPLA_1350001	MPLA_140116	MPLA_1350001	MPLA_140116	ABC transporter related protein.	Uncharacterized protein.	0.569
MPLA_1350001	MPLA_160024	MPLA_1350001	MPLA_160024	ABC transporter related protein.	ATPase_AAA_core domain-containing protein.	0.674
MPLA_1350001	MPLA_160066	MPLA_1350001	MPLA_160066	ABC transporter related protein.	Uncharacterized protein.	0.402
MPLA_1350001	MPLA_220022	MPLA_1350001	MPLA_220022	ABC transporter related protein.	ABC transporter domain-containing protein.	0.508
MPLA_1350069	ABCB	MPLA_1350069	MPLA_1230031	Sigma 54 interacting domain protein.	ABC transporter B family member 25, mitochondrial.	0.684
MPLA_1350069	MPLA_1350001	MPLA_1350069	MPLA_1350001	Sigma 54 interacting domain protein.	ABC transporter related protein.	0.508
MPLA_1350069	MPLA_140116	MPLA_1350069	MPLA_140116	Sigma 54 interacting domain protein.	Uncharacterized protein.	0.533
MPLA_1350069	MPLA_140126	MPLA_1350069	MPLA_140126	Sigma 54 interacting domain protein.	Uncharacterized protein.	0.508
MPLA_1350069	MPLA_160024	MPLA_1350069	MPLA_160024	Sigma 54 interacting domain protein.	ATPase_AAA_core domain-containing protein.	0.521
MPLA_1350069	MPLA_160066	MPLA_1350069	MPLA_160066	Sigma 54 interacting domain protein.	Uncharacterized protein.	0.600
MPLA_1350069	MPLA_220022	MPLA_1350069	MPLA_220022	Sigma 54 interacting domain protein.	ABC transporter domain-containing protein.	0.856
MPLA_1350069	recA	MPLA_1350069	MPLA_30094	Sigma 54 interacting domain protein.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.609
MPLA_140116	MPLA_1350001	MPLA_140116	MPLA_1350001	Uncharacterized protein.	ABC transporter related protein.	0.569