MPLA_220037 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_220037

DUF218 domain-containing protein. (242 aa)

Predicted Functional Partners:

MPLA_220038

0.805

ftsE

0.716

lptD

0.704

MPLA_1270010

0.677

MPLA_1830072

0.627

rosAR

0.621

MPLA_1270006

0.617

ros-2

0.613

MPLA_520011

0.607

MPLA_680008

0.607

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1270006	MPLA_1270010	MPLA_1270006	MPLA_1270010	Permease YjgP/YjgQ family protein.	Uncharacterized protein.	0.872
MPLA_1270006	MPLA_1830072	MPLA_1270006	MPLA_1830072	Permease YjgP/YjgQ family protein.	Septum formation initiator.	0.447
MPLA_1270006	MPLA_220037	MPLA_1270006	MPLA_220037	Permease YjgP/YjgQ family protein.	DUF218 domain-containing protein.	0.617
MPLA_1270006	MPLA_220038	MPLA_1270006	MPLA_220038	Permease YjgP/YjgQ family protein.	Cell division protein.	0.441
MPLA_1270006	ftsE	MPLA_1270006	MPLA_220039	Permease YjgP/YjgQ family protein.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.772
MPLA_1270006	lptD	MPLA_1270006	MPLA_1270005	Permease YjgP/YjgQ family protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.991
MPLA_1270010	MPLA_1270006	MPLA_1270010	MPLA_1270006	Uncharacterized protein.	Permease YjgP/YjgQ family protein.	0.872
MPLA_1270010	MPLA_1830072	MPLA_1270010	MPLA_1830072	Uncharacterized protein.	Septum formation initiator.	0.626
MPLA_1270010	MPLA_220037	MPLA_1270010	MPLA_220037	Uncharacterized protein.	DUF218 domain-containing protein.	0.677
MPLA_1270010	MPLA_220038	MPLA_1270010	MPLA_220038	Uncharacterized protein.	Cell division protein.	0.434
MPLA_1270010	MPLA_520011	MPLA_1270010	MPLA_520011	Uncharacterized protein.	ROSMUCR transcriptional regulator.	0.505
MPLA_1270010	MPLA_680008	MPLA_1270010	MPLA_680008	Uncharacterized protein.	Putative MucR family transcriptional regulatory protein y4pD.	0.519
MPLA_1270010	lptD	MPLA_1270010	MPLA_1270005	Uncharacterized protein.	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.795
MPLA_1270010	ros-2	MPLA_1270010	MPLA_750006	Uncharacterized protein.	Transcriptional regulatory protein ros.	0.521
MPLA_1270010	rosAR	MPLA_1270010	MPLA_1800204	Uncharacterized protein.	Transcriptional regulatory protein rosAr.	0.522
MPLA_1830072	MPLA_1270006	MPLA_1830072	MPLA_1270006	Septum formation initiator.	Permease YjgP/YjgQ family protein.	0.447
MPLA_1830072	MPLA_1270010	MPLA_1830072	MPLA_1270010	Septum formation initiator.	Uncharacterized protein.	0.626
MPLA_1830072	MPLA_220037	MPLA_1830072	MPLA_220037	Septum formation initiator.	DUF218 domain-containing protein.	0.627
MPLA_1830072	MPLA_220038	MPLA_1830072	MPLA_220038	Septum formation initiator.	Cell division protein.	0.875
MPLA_1830072	ftsE	MPLA_1830072	MPLA_220039	Septum formation initiator.	Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.	0.786