MPLA_230033 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

Experiments

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[Homology]

Score

MPLA_230033

Uncharacterized protein. (201 aa)

Predicted Functional Partners:

MPLA_230032

0.788

MPLA_160071

0.769

MPLA_740005

0.766

MPLA_290020

0.744

nodQ

0.743

MPLA_1800050

0.736

MPLA_140319

0.735

MPLA_1220046

0.722

MPLA_1800068

0.721

MPLA_180003

0.719

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1220046	MPLA_140319	MPLA_1220046	MPLA_140319	Uncharacterized protein.	Uncharacterized protein.	0.762
MPLA_1220046	MPLA_160071	MPLA_1220046	MPLA_160071	Uncharacterized protein.	Uncharacterized protein.	0.769
MPLA_1220046	MPLA_180003	MPLA_1220046	MPLA_180003	Uncharacterized protein.	Uncharacterized protein.	0.751
MPLA_1220046	MPLA_1800050	MPLA_1220046	MPLA_1800050	Uncharacterized protein.	Invasion associated locus B family protein.	0.750
MPLA_1220046	MPLA_1800068	MPLA_1220046	MPLA_1800068	Uncharacterized protein.	PAS/PAC and periplasmic/7TM domain sensor-containing diguanylate cyclase/phosphodiesterase.	0.403
MPLA_1220046	MPLA_230032	MPLA_1220046	MPLA_230032	Uncharacterized protein.	Type IV pilus assembly PilZ.	0.694
MPLA_1220046	MPLA_230033	MPLA_1220046	MPLA_230033	Uncharacterized protein.	Uncharacterized protein.	0.722
MPLA_1220046	MPLA_290020	MPLA_1220046	MPLA_290020	Uncharacterized protein.	Uncharacterized protein.	0.753
MPLA_1220046	MPLA_740005	MPLA_1220046	MPLA_740005	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.768
MPLA_140319	MPLA_1220046	MPLA_140319	MPLA_1220046	Uncharacterized protein.	Uncharacterized protein.	0.762
MPLA_140319	MPLA_160071	MPLA_140319	MPLA_160071	Uncharacterized protein.	Uncharacterized protein.	0.753
MPLA_140319	MPLA_180003	MPLA_140319	MPLA_180003	Uncharacterized protein.	Uncharacterized protein.	0.681
MPLA_140319	MPLA_1800050	MPLA_140319	MPLA_1800050	Uncharacterized protein.	Invasion associated locus B family protein.	0.723
MPLA_140319	MPLA_230032	MPLA_140319	MPLA_230032	Uncharacterized protein.	Type IV pilus assembly PilZ.	0.571
MPLA_140319	MPLA_230033	MPLA_140319	MPLA_230033	Uncharacterized protein.	Uncharacterized protein.	0.735
MPLA_140319	MPLA_290020	MPLA_140319	MPLA_290020	Uncharacterized protein.	Uncharacterized protein.	0.735
MPLA_140319	MPLA_740005	MPLA_140319	MPLA_740005	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.739
MPLA_160071	MPLA_1220046	MPLA_160071	MPLA_1220046	Uncharacterized protein.	Uncharacterized protein.	0.769
MPLA_160071	MPLA_140319	MPLA_160071	MPLA_140319	Uncharacterized protein.	Uncharacterized protein.	0.753
MPLA_160071	MPLA_180003	MPLA_160071	MPLA_180003	Uncharacterized protein.	Uncharacterized protein.	0.771