MPLA_250064 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_250064

ATP-binding protein of ribose ABC transporter. (262 aa)

Predicted Functional Partners:

MPLA_250065

0.954

MPLA_250063

0.915

MPLA_340098

0.820

MPLA_1440005

0.726

MPLA_1390083

0.703

MPLA_660007

0.681

MPLA_1800016

0.603

MPLA_1860020

0.593

MPLA_1800133

0.591

xylH-2

0.580

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1390083	MPLA_1440005	MPLA_1390083	MPLA_1440005	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Peripla_BP_4 domain-containing protein.	0.696
MPLA_1390083	MPLA_1800016	MPLA_1390083	MPLA_1800016	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.611
MPLA_1390083	MPLA_1800133	MPLA_1390083	MPLA_1800133	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.548
MPLA_1390083	MPLA_1860020	MPLA_1390083	MPLA_1860020	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ATP-binding protein of ABC transporter.	0.851
MPLA_1390083	MPLA_250063	MPLA_1390083	MPLA_250063	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.548
MPLA_1390083	MPLA_250064	MPLA_1390083	MPLA_250064	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ATP-binding protein of ribose ABC transporter.	0.703
MPLA_1390083	MPLA_250065	MPLA_1390083	MPLA_250065	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Peripla_BP_4 domain-containing protein.	0.696
MPLA_1390083	MPLA_340098	MPLA_1390083	MPLA_340098	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ABC transporter related protein.	0.703
MPLA_1390083	MPLA_660007	MPLA_1390083	MPLA_660007	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	ABC transporter binding protein.	0.696
MPLA_1390083	xylH-2	MPLA_1390083	MPLA_180108	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	D-xylose transporter subunit membrane component of ABC superfamily; Belongs to the binding-protein-dependent transport system permease family.	0.611
MPLA_1440005	MPLA_1390083	MPLA_1440005	MPLA_1390083	Peripla_BP_4 domain-containing protein.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.696
MPLA_1440005	MPLA_1800133	MPLA_1440005	MPLA_1800133	Peripla_BP_4 domain-containing protein.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.651
MPLA_1440005	MPLA_1860020	MPLA_1440005	MPLA_1860020	Peripla_BP_4 domain-containing protein.	ATP-binding protein of ABC transporter.	0.440
MPLA_1440005	MPLA_250063	MPLA_1440005	MPLA_250063	Peripla_BP_4 domain-containing protein.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.499
MPLA_1440005	MPLA_250064	MPLA_1440005	MPLA_250064	Peripla_BP_4 domain-containing protein.	ATP-binding protein of ribose ABC transporter.	0.726
MPLA_1440005	MPLA_340098	MPLA_1440005	MPLA_340098	Peripla_BP_4 domain-containing protein.	ABC transporter related protein.	0.432
MPLA_1800016	MPLA_1390083	MPLA_1800016	MPLA_1390083	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.611
MPLA_1800016	MPLA_1800133	MPLA_1800016	MPLA_1800133	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.497
MPLA_1800016	MPLA_250063	MPLA_1800016	MPLA_250063	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	0.517
MPLA_1800016	MPLA_250064	MPLA_1800016	MPLA_250064	Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.	ATP-binding protein of ribose ABC transporter.	0.603