STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_300014Uncharacterized outer-membrane protein y4mB. (228 aa)    
Predicted Functional Partners:
hemN-2
Coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.823
hemN
Coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.820
MPLA_830029
Cytochrome c oxidase, cbb3-type, subunit II.
 
    0.768
MPLA_2140034
Cytochrome c oxidase, cbb3-type, subunit II.
 
    0.767
gltB
Glutamate synthase, large subunit.
    
  0.747
fixG-2
Nitrogen fixation protein FixG.
 
  
 0.688
fixG
Nitrogen fixation protein FixG.
 
  
 0.687
omp2b
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.678
omp2b-2
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.678
omp2b-3
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.678
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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