MPLA_300034 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

MPLA_300034

Uncharacterized protein. (46 aa)

Predicted Functional Partners:

MPLA_1560003

0.713

omp2b-2

0.645

omp2b-3

0.644

omp2b

0.642

MPLA_300035

0.615

omp2a

0.614

MPLA_1830134

0.598

MPLA_250047

0.573

MPLA_1540011

0.493

MPLA_300032

0.467

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1540011	MPLA_1560003	MPLA_1540011	MPLA_1560003	Uncharacterized protein.	Uncharacterized protein.	0.527
MPLA_1540011	MPLA_1830134	MPLA_1540011	MPLA_1830134	Uncharacterized protein.	DUF2059 domain-containing protein.	0.702
MPLA_1540011	MPLA_250047	MPLA_1540011	MPLA_250047	Uncharacterized protein.	Uncharacterized protein.	0.751
MPLA_1540011	MPLA_300034	MPLA_1540011	MPLA_300034	Uncharacterized protein.	Uncharacterized protein.	0.493
MPLA_1540011	omp2a	MPLA_1540011	MPLA_750104	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.508
MPLA_1540011	omp2b	MPLA_1540011	MPLA_1210001	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.531
MPLA_1540011	omp2b-2	MPLA_1540011	MPLA_1410021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.577
MPLA_1540011	omp2b-3	MPLA_1540011	MPLA_630022	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.560
MPLA_1560003	MPLA_1540011	MPLA_1560003	MPLA_1540011	Uncharacterized protein.	Uncharacterized protein.	0.527
MPLA_1560003	MPLA_1830134	MPLA_1560003	MPLA_1830134	Uncharacterized protein.	DUF2059 domain-containing protein.	0.744
MPLA_1560003	MPLA_250047	MPLA_1560003	MPLA_250047	Uncharacterized protein.	Uncharacterized protein.	0.739
MPLA_1560003	MPLA_300034	MPLA_1560003	MPLA_300034	Uncharacterized protein.	Uncharacterized protein.	0.713
MPLA_1560003	omp2a	MPLA_1560003	MPLA_750104	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.719
MPLA_1560003	omp2b	MPLA_1560003	MPLA_1210001	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.712
MPLA_1560003	omp2b-2	MPLA_1560003	MPLA_1410021	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.716
MPLA_1560003	omp2b-3	MPLA_1560003	MPLA_630022	Uncharacterized protein.	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.720
MPLA_1830134	MPLA_1540011	MPLA_1830134	MPLA_1540011	DUF2059 domain-containing protein.	Uncharacterized protein.	0.702
MPLA_1830134	MPLA_1560003	MPLA_1830134	MPLA_1560003	DUF2059 domain-containing protein.	Uncharacterized protein.	0.744
MPLA_1830134	MPLA_250047	MPLA_1830134	MPLA_250047	DUF2059 domain-containing protein.	Uncharacterized protein.	0.767
MPLA_1830134	MPLA_300034	MPLA_1830134	MPLA_300034	DUF2059 domain-containing protein.	Uncharacterized protein.	0.598