STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pldPyridoxal 4-dehydrogenase. (340 aa)    
Predicted Functional Partners:
MPLA_340095
Amidohydrolase 2.
 
  0.889
MPLA_140170
Putative TIM-barrel fold metal-dependent hydrolase.
 
  0.841
frk
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
    
  0.823
MPLA_100003
Amidohydrolase 2.
  
 
  0.638
sgaA
Serine--glyoxylate aminotransferase.
   
 
  0.548
MPLA_930007
WD-repeart protein, beta transducin-like.
   
  0.541
MPLA_1620047
Uncharacterized protein.
    
  0.530
MPLA_340150
Uncharacterized protein.
    
  0.530
MPLA_30058
Sugar isomerase (SIS).
       0.502
MPLA_30059
Uncharacterized protein.
       0.502
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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