MPLA_30060 protein (Mesorhizobium sp. ORS3359)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_30060

ABC transporter, permease protein. (305 aa)

Predicted Functional Partners:

MPLA_30061

0.993

MPLA_30062

0.985

MPLA_1390065

0.899

MPLA_520033

0.897

MPLA_1610013

0.892

MPLA_1160011

0.891

MPLA_70060

0.888

MPLA_1390077

0.886

MPLA_1830181

0.879

MPLA_140046

0.877

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MPLA_1160011	MPLA_30060	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, permease protein.	0.891
MPLA_1160011	MPLA_30062	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, binding protein.	0.661
MPLA_1390065	MPLA_30060	Permease protein of sugar ABC transporter.	ABC transporter, permease protein.	0.899
MPLA_1390065	MPLA_30062	Permease protein of sugar ABC transporter.	ABC transporter, binding protein.	0.707
MPLA_1390065	MPLA_520033	Permease protein of sugar ABC transporter.	ABC transmembrane type-1 domain-containing protein.	0.561
MPLA_1390077	MPLA_30060	Sugar ABC transporter, permease protein.	ABC transporter, permease protein.	0.886
MPLA_1390077	MPLA_30062	Sugar ABC transporter, permease protein.	ABC transporter, binding protein.	0.661
MPLA_140046	MPLA_30060	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, permease protein.	0.877
MPLA_140046	MPLA_30062	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, binding protein.	0.661
MPLA_1610013	MPLA_30060	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, permease protein.	0.892
MPLA_1610013	MPLA_30062	Binding-protein-dependent transport systems inner membrane component.	ABC transporter, binding protein.	0.661
MPLA_1830181	MPLA_30060	Putative ABC transporter permease protein.	ABC transporter, permease protein.	0.879
MPLA_1830181	MPLA_30062	Putative ABC transporter permease protein.	ABC transporter, binding protein.	0.710
MPLA_30060	MPLA_1160011	ABC transporter, permease protein.	Binding-protein-dependent transport systems inner membrane component.	0.891
MPLA_30060	MPLA_1390065	ABC transporter, permease protein.	Permease protein of sugar ABC transporter.	0.899
MPLA_30060	MPLA_1390077	ABC transporter, permease protein.	Sugar ABC transporter, permease protein.	0.886
MPLA_30060	MPLA_140046	ABC transporter, permease protein.	Binding-protein-dependent transport systems inner membrane component.	0.877
MPLA_30060	MPLA_1610013	ABC transporter, permease protein.	Binding-protein-dependent transport systems inner membrane component.	0.892
MPLA_30060	MPLA_1830181	ABC transporter, permease protein.	Putative ABC transporter permease protein.	0.879
MPLA_30060	MPLA_30061	ABC transporter, permease protein.	Binding-protein-dependent transport systems inner membrane component.	0.993