STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_30064RbsD or FucU transport; Belongs to the RbsD / FucU family. (150 aa)    
Predicted Functional Partners:
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
  0.861
MPLA_340064
Carbohydrate kinase.
 
 
 0.676
MPLA_30062
ABC transporter, binding protein.
 
     0.638
xylB
Xylulose kinase.
  
 
 0.616
MPLA_340067
Uncharacterized protein.
  
 
 0.616
MPLA_1800133
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
  0.605
ugpC-12
Glycerol-3-phosphate transporter subunit ATP-binding component of ABC superfamily; Belongs to the ABC transporter superfamily.
       0.562
rbsC-2
D-ribose transporter subunit membrane component of ABC superfamily; Belongs to the binding-protein-dependent transport system permease family.
     
  0.543
MPLA_1650054
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
     
  0.543
MPLA_1230019
Rhamnose ABC transporter, periplasmic rhamnose-binding protein.
  
  
  0.523
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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