MPLA_30068 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_30068

Uncharacterized protein. (179 aa)

Predicted Functional Partners:

glgP

0.951

glgB

0.937

pgm

0.643

xylB

0.591

MPLA_340064

0.591

MPLA_340067

0.591

MPLA_30069

0.572

glk

0.564

MPLA_520015

0.540

MPLA_1360024

0.508

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1360024	MPLA_30068	MPLA_1360024	MPLA_30068	Glycosyltransferase.	Uncharacterized protein.	0.508
MPLA_1360024	glgB	MPLA_1360024	MPLA_1800136	Glycosyltransferase.	1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.801
MPLA_1360024	glgP	MPLA_1360024	MPLA_1800135	Glycosyltransferase.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.692
MPLA_30068	MPLA_1360024	MPLA_30068	MPLA_1360024	Uncharacterized protein.	Glycosyltransferase.	0.508
MPLA_30068	MPLA_30069	MPLA_30068	MPLA_30069	Uncharacterized protein.	Uncharacterized protein.	0.572
MPLA_30068	MPLA_340064	MPLA_30068	MPLA_340064	Uncharacterized protein.	Carbohydrate kinase.	0.591
MPLA_30068	MPLA_340067	MPLA_30068	MPLA_340067	Uncharacterized protein.	Uncharacterized protein.	0.591
MPLA_30068	MPLA_520015	MPLA_30068	MPLA_520015	Uncharacterized protein.	Glucan 1,4-alpha-glucosidase.	0.540
MPLA_30068	glgB	MPLA_30068	MPLA_1800136	Uncharacterized protein.	1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.937
MPLA_30068	glgP	MPLA_30068	MPLA_1800135	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.951
MPLA_30068	glk	MPLA_30068	MPLA_380021	Uncharacterized protein.	Glucokinase; Belongs to the bacterial glucokinase family.	0.564
MPLA_30068	pgm	MPLA_30068	MPLA_1800139	Uncharacterized protein.	Phosphoglucomutase.	0.643
MPLA_30068	xylB	MPLA_30068	MPLA_1100028	Uncharacterized protein.	Xylulose kinase.	0.591
MPLA_30069	MPLA_30068	MPLA_30069	MPLA_30068	Uncharacterized protein.	Uncharacterized protein.	0.572
MPLA_340064	MPLA_30068	MPLA_340064	MPLA_30068	Carbohydrate kinase.	Uncharacterized protein.	0.591
MPLA_340064	MPLA_340067	MPLA_340064	MPLA_340067	Carbohydrate kinase.	Uncharacterized protein.	0.498
MPLA_340067	MPLA_30068	MPLA_340067	MPLA_30068	Uncharacterized protein.	Uncharacterized protein.	0.591
MPLA_340067	MPLA_340064	MPLA_340067	MPLA_340064	Uncharacterized protein.	Carbohydrate kinase.	0.498
MPLA_520015	MPLA_30068	MPLA_520015	MPLA_30068	Glucan 1,4-alpha-glucosidase.	Uncharacterized protein.	0.540
MPLA_520015	glgB	MPLA_520015	MPLA_1800136	Glucan 1,4-alpha-glucosidase.	1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.890