MPLA_30110 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_30110

Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily. (111 aa)

Predicted Functional Partners:

MPLA_30111

0.992

bolA

0.975

grxC

0.929

sufA

0.888

yadR

0.881

iscA

0.859

MPLA_670093

0.821

MPLA_290028

0.818

MPLA_30085

0.784

sufB

0.768

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_290028	MPLA_30085	MPLA_290028	MPLA_30085	NifU_N domain-containing protein.	FeS assembly protein SufD.	0.927
MPLA_290028	MPLA_30110	MPLA_290028	MPLA_30110	NifU_N domain-containing protein.	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	0.818
MPLA_290028	MPLA_30111	MPLA_290028	MPLA_30111	NifU_N domain-containing protein.	Uncharacterized protein; Belongs to the BolA/IbaG family.	0.691
MPLA_290028	bolA	MPLA_290028	MPLA_220006	NifU_N domain-containing protein.	Regulator of penicillin binding proteins and beta lactamase transcription (Morphogene); Belongs to the BolA/IbaG family.	0.691
MPLA_290028	grxC	MPLA_290028	MPLA_950022	NifU_N domain-containing protein.	Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.	0.659
MPLA_290028	iscA	MPLA_290028	MPLA_670106	NifU_N domain-containing protein.	FeS cluster assembly protein; Belongs to the HesB/IscA family.	0.915
MPLA_290028	sufA	MPLA_290028	MPLA_30088	NifU_N domain-containing protein.	Fe-S cluster assembly protein; Belongs to the HesB/IscA family.	0.975
MPLA_290028	sufB	MPLA_290028	MPLA_30082	NifU_N domain-containing protein.	Transport protein associated with Fe-S cluster assembly.	0.927
MPLA_290028	yadR	MPLA_290028	MPLA_310031	NifU_N domain-containing protein.	Putative chaperone involved in Fe-S cluster assembly and activation hesB-like; Belongs to the HesB/IscA family.	0.915
MPLA_30085	MPLA_290028	MPLA_30085	MPLA_290028	FeS assembly protein SufD.	NifU_N domain-containing protein.	0.927
MPLA_30085	MPLA_30110	MPLA_30085	MPLA_30110	FeS assembly protein SufD.	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	0.784
MPLA_30085	MPLA_30111	MPLA_30085	MPLA_30111	FeS assembly protein SufD.	Uncharacterized protein; Belongs to the BolA/IbaG family.	0.755
MPLA_30085	MPLA_670093	MPLA_30085	MPLA_670093	FeS assembly protein SufD.	Nitrogen fixation protein nifQ.	0.874
MPLA_30085	bolA	MPLA_30085	MPLA_220006	FeS assembly protein SufD.	Regulator of penicillin binding proteins and beta lactamase transcription (Morphogene); Belongs to the BolA/IbaG family.	0.720
MPLA_30085	iscA	MPLA_30085	MPLA_670106	FeS assembly protein SufD.	FeS cluster assembly protein; Belongs to the HesB/IscA family.	0.653
MPLA_30085	sufA	MPLA_30085	MPLA_30088	FeS assembly protein SufD.	Fe-S cluster assembly protein; Belongs to the HesB/IscA family.	0.943
MPLA_30085	sufB	MPLA_30085	MPLA_30082	FeS assembly protein SufD.	Transport protein associated with Fe-S cluster assembly.	0.999
MPLA_30085	yadR	MPLA_30085	MPLA_310031	FeS assembly protein SufD.	Putative chaperone involved in Fe-S cluster assembly and activation hesB-like; Belongs to the HesB/IscA family.	0.653
MPLA_30110	MPLA_290028	MPLA_30110	MPLA_290028	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	NifU_N domain-containing protein.	0.818
MPLA_30110	MPLA_30085	MPLA_30110	MPLA_30085	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	FeS assembly protein SufD.	0.784