Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_30132XdhC_CoxI domain-containing protein. (112 aa)    
Predicted Functional Partners:
MPLA_30133
XdhC_C domain-containing protein.
  
  0.998
MPLA_30134
MoCF_biosynth domain-containing protein.
 
 
 0.984
MPLA_320087
Carbon monoxide dehydrogenase chain C.
 
 
 0.915
xdhA
Xanthine dehydrogenase, molybdenum binding subunit.
 
 
 0.895
MPLA_30131
VWA containing CoxE family protein.
 
     0.854
MPLA_320089
Putative carbon-monoxide dehydrogenase small subunit, coxS-like protein.
 
 
 0.854
MPLA_320088
Putative carbon-monoxide dehydrogenase large subunit, coxL-like protein.
 
 
 0.835
MPLA_30130
AAA_5 domain-containing protein.
 
     0.813
MPLA_30135
Uncharacterized protein.
       0.802
MPLA_1120011
Monoxide dehydrogenase.
 
 
 0.788
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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