STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_30141Aminotransferase. (386 aa)    
Predicted Functional Partners:
MPLA_290028
NifU_N domain-containing protein.
 
 0.977
MPLA_1800205
Uncharacterized SufE-like protein R01000.
 0.972
sufC
Component of SufBCD complex, ATP-binding component of ABC superfamily.
 
 
 0.968
MPLA_670093
Nitrogen fixation protein nifQ.
  
 0.966
sufB
Transport protein associated with Fe-S cluster assembly.
 
 0.957
MPLA_30085
FeS assembly protein SufD.
 
 0.956
MPLA_30081
Nitrogenase cofactor synthesis protein nifS.
  
 
 0.778
iscS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 
 0.777
MPLA_30134
MoCF_biosynth domain-containing protein.
  
 
 0.753
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
     
 0.743
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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