Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ycdFGlucose 1-dehydrogenase 2. (257 aa)    
Predicted Functional Partners:
MPLA_870003
AMP-dependent synthetase and ligase.
  
 0.901
MPLA_1830051
Oxidoreductase.
  
 
  0.837
MPLA_90043
Uncharacterized short-chain type dehydrogenase/reductase y4eK; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.823
MPLA_320078
Dihydroorotase.
   
   0.793
MPLA_80010
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.778
MPLA_320077
Putative polysaccharide deacetylase.
       0.777
MPLA_140262
Uncharacterized oxidoreductase TM_0325.
  
     0.756
MPLA_110003
Short-chain dehydrogenase/reductase SDR.
  
     0.748
MPLA_320076
Nucleoside-diphosphate-sugar epimerase.
 
 
   0.744
MPLA_340110
Short-chain dehydrogenase/reductase family protein.
  
     0.740
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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