MPLA_320100 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

MPLA_320100

Uncharacterized protein. (278 aa)

Predicted Functional Partners:

MPLA_320099

0.773

ispU

0.540

betC

0.535

MPLA_190008

0.535

MPLA_320098

0.484

MPLA_1390083

0.473

ydeK

0.448

ARSI

0.439

rpsD

0.437

ispB

0.425

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARSI	MPLA_190008	MPLA_1410017	MPLA_190008	Arylsulfatase I.	Sulfatase.	0.646
ARSI	MPLA_320100	MPLA_1410017	MPLA_320100	Arylsulfatase I.	Uncharacterized protein.	0.439
ARSI	betC	MPLA_1410017	MPLA_1800163	Arylsulfatase I.	Choline-sulfatase.	0.625
ARSI	rpsD	MPLA_1410017	MPLA_30106	Arylsulfatase I.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.683
ARSI	ydeK	MPLA_1410017	MPLA_320097	Arylsulfatase I.	Uncharacterized transporter YdeK.	0.439
MPLA_1390083	MPLA_320100	MPLA_1390083	MPLA_320100	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Uncharacterized protein.	0.473
MPLA_1390083	ydeK	MPLA_1390083	MPLA_320097	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	Uncharacterized transporter YdeK.	0.473
MPLA_190008	ARSI	MPLA_190008	MPLA_1410017	Sulfatase.	Arylsulfatase I.	0.646
MPLA_190008	MPLA_320100	MPLA_190008	MPLA_320100	Sulfatase.	Uncharacterized protein.	0.535
MPLA_190008	rpsD	MPLA_190008	MPLA_30106	Sulfatase.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.683
MPLA_190008	ydeK	MPLA_190008	MPLA_320097	Sulfatase.	Uncharacterized transporter YdeK.	0.439
MPLA_320098	MPLA_320099	MPLA_320098	MPLA_320099	Putative transcriptional regulator.	Regulatory protein TetR.	0.484
MPLA_320098	MPLA_320100	MPLA_320098	MPLA_320100	Putative transcriptional regulator.	Uncharacterized protein.	0.484
MPLA_320098	ydeK	MPLA_320098	MPLA_320097	Putative transcriptional regulator.	Uncharacterized transporter YdeK.	0.901
MPLA_320099	MPLA_320098	MPLA_320099	MPLA_320098	Regulatory protein TetR.	Putative transcriptional regulator.	0.484
MPLA_320099	MPLA_320100	MPLA_320099	MPLA_320100	Regulatory protein TetR.	Uncharacterized protein.	0.773
MPLA_320100	ARSI	MPLA_320100	MPLA_1410017	Uncharacterized protein.	Arylsulfatase I.	0.439
MPLA_320100	MPLA_1390083	MPLA_320100	MPLA_1390083	Uncharacterized protein.	Putative ABC transporter (Protein fusion consisting of two ATP-binding domains and permease).	0.473
MPLA_320100	MPLA_190008	MPLA_320100	MPLA_190008	Uncharacterized protein.	Sulfatase.	0.535
MPLA_320100	MPLA_320098	MPLA_320100	MPLA_320098	Uncharacterized protein.	Putative transcriptional regulator.	0.484