Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MPLA_330008Transcriptional regulator, XRE family. (195 aa)    
Predicted Functional Partners:
MPLA_330009
FAD dependent oxidoreductase; Belongs to the GcvT family.
 
 
 0.871
MPLA_330012
Sarcosine dehydrogenase; Belongs to the GcvT family.
 
 
 0.857
MPLA_330010
Homocysteine S-methyltransferase.
 
    0.803
aruH
Aminotransferase.
  
 
  0.732
maeB
Putative fused malic enzyme oxidoreductase phosphotransacetylase.
    
 0.693
maeB-2
Putative fused malic enzyme oxidoreductase phosphotransacetylase.
    
 0.693
MPLA_1520008
Prephenate dehydratase.
  
 
 0.618
MPLA_1390032
Alpha/beta hydrolase fold protein.
    
 0.609
cpsB
Mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 0.604
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.599
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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