MPLA_340036 protein (Mesorhizobium sp. ORS3359)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MPLA_340036

Glycosyl transferase group 1. (360 aa)

Predicted Functional Partners:

udg

0.748

MPLA_340041

0.721

glgB

0.703

gumJ

0.677

MPLA_1320016

0.617

MPLA_1830202

0.607

MPLA_1100041

0.606

MPLA_320193

0.603

MPLA_340044

0.600

MPLA_230034

0.581

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1100041	MPLA_1320016	MPLA_1100041	MPLA_1320016	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1100041	MPLA_1830202	MPLA_1100041	MPLA_1830202	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1100041	MPLA_230034	MPLA_1100041	MPLA_230034	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.476
MPLA_1100041	MPLA_320193	MPLA_1100041	MPLA_320193	Uncharacterized protein.	Methyltransferase FkbM family.	0.774
MPLA_1100041	MPLA_340036	MPLA_1100041	MPLA_340036	Uncharacterized protein.	Glycosyl transferase group 1.	0.606
MPLA_1100041	MPLA_340041	MPLA_1100041	MPLA_340041	Uncharacterized protein.	Uncharacterized protein.	0.768
MPLA_1100041	MPLA_340044	MPLA_1100041	MPLA_340044	Uncharacterized protein.	Transglut_core3 domain-containing protein.	0.562
MPLA_1320016	MPLA_1100041	MPLA_1320016	MPLA_1100041	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1320016	MPLA_1830202	MPLA_1320016	MPLA_1830202	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1320016	MPLA_230034	MPLA_1320016	MPLA_230034	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.507
MPLA_1320016	MPLA_320193	MPLA_1320016	MPLA_320193	Uncharacterized protein.	Methyltransferase FkbM family.	0.774
MPLA_1320016	MPLA_340036	MPLA_1320016	MPLA_340036	Uncharacterized protein.	Glycosyl transferase group 1.	0.617
MPLA_1320016	MPLA_340041	MPLA_1320016	MPLA_340041	Uncharacterized protein.	Uncharacterized protein.	0.768
MPLA_1320016	MPLA_340044	MPLA_1320016	MPLA_340044	Uncharacterized protein.	Transglut_core3 domain-containing protein.	0.529
MPLA_1830202	MPLA_1100041	MPLA_1830202	MPLA_1100041	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1830202	MPLA_1320016	MPLA_1830202	MPLA_1320016	Uncharacterized protein.	Uncharacterized protein.	0.774
MPLA_1830202	MPLA_230034	MPLA_1830202	MPLA_230034	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.453
MPLA_1830202	MPLA_320193	MPLA_1830202	MPLA_320193	Uncharacterized protein.	Methyltransferase FkbM family.	0.773
MPLA_1830202	MPLA_340036	MPLA_1830202	MPLA_340036	Uncharacterized protein.	Glycosyl transferase group 1.	0.607
MPLA_1830202	MPLA_340041	MPLA_1830202	MPLA_340041	Uncharacterized protein.	Uncharacterized protein.	0.763