Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_340060Xylose isomerase domain protein TIM barrel. (297 aa)    
Predicted Functional Partners:
MPLA_340067
Uncharacterized protein.
    
  0.669
MPLA_340061
Periplasmic binding protein/LacI transcriptional regulator.
 
     0.655
MPLA_340064
Carbohydrate kinase.
 
  
  0.651
trpE(G
Anthranilate synthase.
    
  0.589
MPLA_340065
Transcriptional regulator.
 
     0.559
xylB
Xylulose kinase.
    
  0.549
MPLA_340059
Uncharacterized protein.
       0.547
fucA
L-fuculose-1-phosphate aldolase.
     
  0.503
MPLA_140054
Fructokinase.
 
 
  0.491
MPLA_2130122
Putative sugar epimerase.
 
 
  0.487
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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