STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
inhAIsonitrile hydratase. (235 aa)    
Predicted Functional Partners:
MPLA_340076
AraC family transcriptional regulator.
 
    
0.646
MPLA_1930010
AraC family transcriptional regulator.
 
     0.584
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.539
MPLA_340074
GntR domain-containing protein.
  
    0.529
MPLA_340073
Uncharacterized protein.
       0.506
cdhR
HTH-type transcriptional regulator CdhR.
 
     0.469
MPLA_340072
Family 1 extracellular solute-binding protein.
       0.461
MPLA_940007
AraC family transcriptional regulator.
 
     0.400
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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