hisQ-2 protein (Mesorhizobium sp. ORS3359) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

hisQ-2

Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily. (263 aa)

Predicted Functional Partners:

MPLA_340117

0.987

MPLA_1150002

0.970

hisP-2

0.960

MPLA_1830160

0.954

hisJ-2

0.945

hisM

0.935

hisP

0.934

MPLA_1150001

0.925

yecS

0.924

MPLA_460002

0.924

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1150001	MPLA_1150002	MPLA_1150001	MPLA_1150002	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150001	MPLA_1830160	MPLA_1150001	MPLA_1830160	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.919
MPLA_1150001	MPLA_340117	MPLA_1150001	MPLA_340117	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.922
MPLA_1150001	MPLA_460002	MPLA_1150001	MPLA_460002	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.918
MPLA_1150001	hisJ-2	MPLA_1150001	MPLA_340115	Polar amino acid ABC transporter inner membrane subunit.	annotation not available	0.831
MPLA_1150001	hisM	MPLA_1150001	MPLA_1170005	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.763
MPLA_1150001	hisP	MPLA_1150001	MPLA_1170004	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit ATP-binding component of ABC superfamily.	0.852
MPLA_1150001	hisP-2	MPLA_1150001	MPLA_340114	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit ATP-binding component of ABC superfamily.	0.855
MPLA_1150001	hisQ-2	MPLA_1150001	MPLA_340116	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.925
MPLA_1150001	yecS	MPLA_1150001	MPLA_1360015	Polar amino acid ABC transporter inner membrane subunit.	Putative transporter subunit: permease component of ABC superfamily transporter.	0.920
MPLA_1150002	MPLA_1150001	MPLA_1150002	MPLA_1150001	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.989
MPLA_1150002	MPLA_1830160	MPLA_1150002	MPLA_1830160	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.917
MPLA_1150002	MPLA_340117	MPLA_1150002	MPLA_340117	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter inner membrane subunit.	0.923
MPLA_1150002	MPLA_460002	MPLA_1150002	MPLA_460002	Polar amino acid ABC transporter inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.927
MPLA_1150002	hisJ-2	MPLA_1150002	MPLA_340115	Polar amino acid ABC transporter inner membrane subunit.	annotation not available	0.815
MPLA_1150002	hisM	MPLA_1150002	MPLA_1170005	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.770
MPLA_1150002	hisP	MPLA_1150002	MPLA_1170004	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit ATP-binding component of ABC superfamily.	0.842
MPLA_1150002	hisP-2	MPLA_1150002	MPLA_340114	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit ATP-binding component of ABC superfamily.	0.844
MPLA_1150002	hisQ-2	MPLA_1150002	MPLA_340116	Polar amino acid ABC transporter inner membrane subunit.	Histidine/lysine/arginine/ornithine transporter subunit membrane component of ABC superfamily.	0.970
MPLA_1150002	yecS	MPLA_1150002	MPLA_1360015	Polar amino acid ABC transporter inner membrane subunit.	Putative transporter subunit: permease component of ABC superfamily transporter.	0.920