MPLA_420001 protein (Mesorhizobium sp. ORS3359)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MPLA_420001

Uncharacterized protein. (367 aa)

Predicted Functional Partners:

MPLA_770081

0.708

smc

0.694

MPLA_420002

0.681

folE

0.664

MPLA_1380019

0.655

MPLA_160066

0.655

sodB

0.587

MPLA_160102

0.585

MPLA_1190015

0.580

MPLA_160186

0.580

Your Current Organism:

Mesorhizobium sp. ORS3359

NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPLA_1190015	MPLA_160186	MPLA_1190015	MPLA_160186	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.856
MPLA_1190015	MPLA_420001	MPLA_1190015	MPLA_420001	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.580
MPLA_1380019	MPLA_420001	MPLA_1380019	MPLA_420001	Peptidoglycan-binding domain 1 protein.	Uncharacterized protein.	0.655
MPLA_1380019	MPLA_770081	MPLA_1380019	MPLA_770081	Peptidoglycan-binding domain 1 protein.	Uncharacterized protein.	0.615
MPLA_160066	MPLA_420001	MPLA_160066	MPLA_420001	Uncharacterized protein.	Uncharacterized protein.	0.655
MPLA_160066	MPLA_770081	MPLA_160066	MPLA_770081	Uncharacterized protein.	Uncharacterized protein.	0.441
MPLA_160102	MPLA_420001	MPLA_160102	MPLA_420001	Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.585
MPLA_160186	MPLA_1190015	MPLA_160186	MPLA_1190015	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.856
MPLA_160186	MPLA_420001	MPLA_160186	MPLA_420001	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.580
MPLA_420001	MPLA_1190015	MPLA_420001	MPLA_1190015	Uncharacterized protein.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.580
MPLA_420001	MPLA_1380019	MPLA_420001	MPLA_1380019	Uncharacterized protein.	Peptidoglycan-binding domain 1 protein.	0.655
MPLA_420001	MPLA_160066	MPLA_420001	MPLA_160066	Uncharacterized protein.	Uncharacterized protein.	0.655
MPLA_420001	MPLA_160102	MPLA_420001	MPLA_160102	Uncharacterized protein.	Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.	0.585
MPLA_420001	MPLA_160186	MPLA_420001	MPLA_160186	Uncharacterized protein.	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.580
MPLA_420001	MPLA_420002	MPLA_420001	MPLA_420002	Uncharacterized protein.	Transcriptional regulator, AsnC family.	0.681
MPLA_420001	MPLA_770081	MPLA_420001	MPLA_770081	Uncharacterized protein.	Uncharacterized protein.	0.708
MPLA_420001	folE	MPLA_420001	MPLA_290029	Uncharacterized protein.	GTP cyclohydrolase 1.	0.664
MPLA_420001	smc	MPLA_420001	MPLA_1800079	Uncharacterized protein.	Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.	0.694
MPLA_420001	sodB	MPLA_420001	MPLA_1800197	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.587
MPLA_420002	MPLA_420001	MPLA_420002	MPLA_420001	Transcriptional regulator, AsnC family.	Uncharacterized protein.	0.681