Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MPLA_440019Zinc-ribbon_6 domain-containing protein. (358 aa)    
Predicted Functional Partners:
MPLA_160111
TGc domain-containing protein.
 
     0.772
MPLA_160110
Alpha-E domain-containing protein.
 
     0.679
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
     
  0.552
MPLA_160109
Transglutaminase.
 
     0.550
MPLA_440018
SH3b domain-containing protein.
 
     0.543
MPLA_1830315
Uncharacterized protein.
 
     0.459
MPLA_560002
Transglutaminase domain protein.
 
     0.434
MPLA_440020
Transglycosylase.
       0.400
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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