STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaRPca regulon regulatory protein. (256 aa)    
Predicted Functional Partners:
MPLA_180037
Transcriptional regulator.
  
     0.744
catI
3-oxoadipate CoA-transferase subunit A.
 
  
 0.723
paaE
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.717
catJ
3-oxoadipate CoA-transferase subunit B.
 
  
 0.708
MPLA_120009
Transcriptional regulator, IclR family.
  
     0.702
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
   
 0.624
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
    
 0.607
MPLA_1610022
GntR domain protein.
  
    0.586
pdhR
GntR family transcriptional regulator.
  
  
 0.582
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
   
 0.554
Your Current Organism:
Mesorhizobium sp. ORS3359
NCBI taxonomy Id: 408184
Other names: M. sp. ORS 3359, Mesorhizobium sp. ORS 3359
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