STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiDNBifunctional thiamine biosynthesis protein ThiDN. (346 aa)    
Predicted Functional Partners:
thiD
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
   
 0.998
thiL_1
Thiamine-monophosphate kinase.
     
 0.977
thiC_1
Phosphomethylpyrimidine synthase.
    
 0.744
thiC_2
Phosphomethylpyrimidine synthase.
    
 0.744
glmS_1
Glutamine--fructose-6-phosphate aminotransferase [isomerizing].
       0.709
GCA_000745485_01300
Putative thiazole biosynthetic enzyme.
 
   
 0.577
GCA_000745485_00033
Putative thiazole biosynthetic enzyme.
 
   
 0.572
thiI
Putative tRNA sulfurtransferase.
      
 0.474
ribH_2
6,7-dimethyl-8-ribityllumazine synthase.
      
 0.474
hemC
Porphobilinogen deaminase.
      
 0.465
Your Current Organism:
Methanobacterium veterum
NCBI taxonomy Id: 408577
Other names: DSM 19849, M. veterum, Methanobacterium sp. MK4, Methanobacterium veterum Krivushin et al. 2010, VKM B-2440, strain MK4
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