STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000745485_00859Hypothetical protein. (187 aa)    
Predicted Functional Partners:
cmk_3
Cytidylate kinase.
 
    0.880
secY
Protein translocase subunit SecY.
 
    0.847
rplO_2
50S ribosomal protein L15.
 
    0.748
GCA_000745485_00863
Hypothetical protein.
 
    0.702
GCA_000745485_00858
Hypothetical protein.
 
     0.687
GCA_000745485_00866
Hypothetical protein.
 
    0.676
GCA_000745485_00856
Hypothetical protein.
 
     0.673
rpsE
30S ribosomal protein S5.
  
    0.658
GCA_000745485_00587
Hypothetical protein.
  
     0.610
cmk_2
Cytidylate kinase.
       0.610
Your Current Organism:
Methanobacterium veterum
NCBI taxonomy Id: 408577
Other names: DSM 19849, M. veterum, Methanobacterium sp. MK4, Methanobacterium veterum Krivushin et al. 2010, VKM B-2440, strain MK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.