STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypeA_1Acetyltransferase YpeA. (152 aa)    
Predicted Functional Partners:
cmoA_2
tRNA (cmo5U34)-methyltransferase.
 
   
 0.785
proC_2
Pyrroline-5-carboxylate reductase.
 
     0.736
glmS_2
Glutamine--fructose-6-phosphate aminotransferase [isomerizing].
  
 0.451
ydaF
Putative ribosomal N-acetyltransferase YdaF.
 
  
 0.433
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.420
argH
Argininosuccinate lyase.
 
  
 0.402
rimL
Ribosomal-protein-serine acetyltransferase.
 
  
 0.401
Your Current Organism:
Methanobacterium veterum
NCBI taxonomy Id: 408577
Other names: DSM 19849, M. veterum, Methanobacterium sp. MK4, Methanobacterium veterum Krivushin et al. 2010, VKM B-2440, strain MK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.