STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
albA_2Antilisterial bacteriocin subtilosin biosynthesis protein AlbA. (448 aa)    
Predicted Functional Partners:
nrdD
Anaerobic ribonucleoside-triphosphate reductase.
    
  0.879
GCA_000745485_03156
Hypothetical protein.
 
    0.563
moaA1
GTP 3',8-cyclase 1.
    
 0.456
fom3_4
2-hydroxyethylphosphonate methyltransferase.
 
  
 0.400
Your Current Organism:
Methanobacterium veterum
NCBI taxonomy Id: 408577
Other names: DSM 19849, M. veterum, Methanobacterium sp. MK4, Methanobacterium veterum Krivushin et al. 2010, VKM B-2440, strain MK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.