STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI49952.1SusD family protein. (548 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.992
SEJ19208.1
Hypothetical protein.
  
 0.992
SEI49967.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.947
SEI37487.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.687
SEI41642.1
Starch-binding associating with outer membrane.
  
     0.633
SEJ50646.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.595
SEI41653.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.592
SEJ27951.1
Iron complex outermembrane recepter protein.
 
     0.581
SEJ50660.1
Starch-binding associating with outer membrane.
  
     0.574
SEI57424.1
Starch-binding associating with outer membrane.
  
     0.549
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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