STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI57481.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa)    
Predicted Functional Partners:
SEI57460.1
FecR family protein.
 
   0.739
SEI70513.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.651
SEI43255.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.626
SEI37599.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.612
SEJ03255.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.612
SEI94447.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.611
SEJ41111.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.611
SEJ62031.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.592
SEI39885.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.563
SEJ48045.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.553
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.