Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEI78283.1Starch-binding associating with outer membrane. (534 aa)    
Predicted Functional Partners:
SEI78307.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.953
SEI45026.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.723
SEI61336.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.714
SEI78265.1
Repeat domain-containing protein.
 
     0.634
SEI55745.1
Protein of unknown function.
   
   0.620
SEI61274.1
L-seryl-tRNA(Ser) seleniumtransferase.
  
     0.601
SEI78256.1
PAP2 superfamily protein.
 
     0.592
SEJ20723.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.591
SEI61533.1
L-seryl-tRNA(Ser) seleniumtransferase.
  
     0.568
SEI98864.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.568
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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