STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI95769.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)    
Predicted Functional Partners:
SEI95786.1
FecR family protein.
 
   0.776
SEJ49906.1
FecR family protein.
  
   0.712
SEJ26931.1
FecR family protein.
  
   0.652
SEJ50214.1
FecR family protein.
  
   0.635
SEI78650.1
FecR family protein.
  
   0.630
SEI94426.1
FecR family protein.
  
   0.617
SEI95823.1
Starch-binding associating with outer membrane.
 
     0.599
SEI61354.1
FecR family protein.
  
   0.595
SEI57460.1
FecR family protein.
  
   0.593
SEI37591.1
FecR family protein.
  
   0.567
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.