STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI97410.1Protein N-acetyltransferase, RimJ/RimL family. (163 aa)    
Predicted Functional Partners:
SEJ28917.1
Glutamate synthase (NADH) large subunit.
   
 
 0.796
SEI54620.1
Chorismate mutase.
    
  0.734
SEJ63740.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.731
SEJ54804.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.651
SEI97420.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
       0.634
SEJ56240.1
3-hydroxyacyl-CoA dehydrogenase.
    
 0.602
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.579
SEI97446.1
Protein of unknown function.
       0.571
SEI97388.1
Lysophospholipase L1.
       0.534
SEI97465.1
Winged helix DNA-binding domain-containing protein.
       0.506
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.