STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ09495.1GH3 auxin-responsive promoter. (500 aa)    
Predicted Functional Partners:
SEJ33180.1
Acyl-CoA reductase (LuxC).
 
 
  0.783
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.752
SEJ10899.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.752
SEJ09547.1
Hypothetical protein.
       0.732
SEJ54003.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.719
SEI81034.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.687
SEJ57587.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.687
SEJ58294.1
Hypothetical protein.
  
     0.643
SEJ09860.1
Protein of unknown function.
  
     0.634
SEJ47430.1
uroporphyrinogen-III synthase.
  
     0.634
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.