STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ10329.1PAP2 superfamily protein. (218 aa)    
Predicted Functional Partners:
SEJ01271.1
Cytochrome P450.
   
  0.802
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.775
SEJ10352.1
Nicotinamidase-related amidase.
       0.773
SEJ10306.1
4-amino-4-deoxy-L-arabinose transferase.
  
    0.688
SEI49616.1
Long-chain acyl-CoA synthetase.
    
  0.601
SEI74991.1
fatty-acyl-CoA synthase.
    
  0.601
SEJ29948.1
O-succinylbenzoic acid--CoA ligase.
    
  0.601
SEJ10370.1
Hypothetical protein.
       0.556
SEJ66927.1
Tetratricopeptide repeat-containing protein.
  
     0.532
SEJ19208.1
Hypothetical protein.
    
   0.521
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
Server load: low (20%) [HD]