STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ63922.1Protein of unknown function. (376 aa)    
Predicted Functional Partners:
SEJ63931.1
Hypothetical protein.
 
     0.952
SEJ63876.1
Hypothetical protein.
 
     0.941
SEJ63894.1
TonB-dependent Receptor Plug Domain.
 
     0.939
SEJ63904.1
Protein of unknown function.
 
    
0.724
SEI53984.1
Lysophospholipase L1.
  
     0.520
SEJ56809.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.518
SEI77220.1
Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter.
  
     0.474
SEJ31640.1
Hypothetical protein.
  
     0.444
SEJ61849.1
Phage shock protein C (PspC) family protein.
  
     0.433
SEI95007.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.