STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ64431.1Repeat domain-containing protein. (1185 aa)    
Predicted Functional Partners:
SEJ50631.1
PAP2 superfamily protein.
 
    0.777
SEJ50689.1
PAP2 superfamily protein.
 
    0.776
SEI78256.1
PAP2 superfamily protein.
 
    0.775
SEJ64439.1
Hypothetical protein.
       0.773
SEJ32400.1
Signal transduction histidine kinase.
  
 
 0.771
SEI42513.1
PAP2 superfamily protein.
  
     0.737
SEI96347.1
Signal transduction histidine kinase.
  
 
 0.687
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.654
SEI42503.1
Hypothetical protein.
  
     0.606
SEJ64454.1
Starch-binding associating with outer membrane.
 
     0.576
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.